PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.258730.1

Common Name

Csa_3G121060, LOC101209904

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 180aa MW: 20932.8 Da PI: 10.1457

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.258730.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	93	151	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk s +prsYY+Ct+ +C+vkk+v+r ++d ++v++tYeg Hnh+ Cucsa.258730.1 93 LDDGYRWRKYGQKAVKHSLHPRSYYKCTYVTCNVKKQVQRLSKDRSIVVTTYEGIHNHP 151 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-32	80	151	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-28	85	151	IPR003657	WRKY domain
PROSITE profile	PS50811	27.921	88	153	IPR003657	WRKY domain
SMART	SM00774	9.3E-36	93	152	IPR003657	WRKY domain
Pfam	PF03106	7.5E-25	94	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
EENHQLQHPP PLLFPSLPCS DPLATSLEID WIAVLSGQEA TRDLPPTSST CESLERRRDE 60 EKSNQRKKGG RQRRKAVGRR RFEFQTRSTE DILDDGYRWR KYGQKAVKHS LHPRSYYKCT 120 YVTCNVKKQV QRLSKDRSIV VTTYEGIHNH PSHILMQTLT PLLKQIHTSF PLSKLFMNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	84	150	8	74	Probable WRKY transcription factor 4
2lex_A	3e-24	84	150	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	2e-89	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	2e-89	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134318.1	1e-133	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q9FFS3	4e-45	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A0A0L635	1e-133	A0A0A0L635_CUCSA; Uncharacterized protein
STRING	VIT_15s0046g02150.t01	9e-55	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	1e-45	WRKY DNA-binding protein 24

Link Out ? help Back to Top
Phytozome	Cucsa.258730.1
Entrez Gene	101209904

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]