PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258730.1
Common NameCsa_3G121060, LOC101209904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 180aa    MW: 20932.8 Da    PI: 10.1457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-3193151159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk s +prsYY+Ct+ +C+vkk+v+r ++d ++v++tYeg Hnh+
  Cucsa.258730.1  93 LDDGYRWRKYGQKAVKHSLHPRSYYKCTYVTCNVKKQVQRLSKDRSIVVTTYEGIHNHP 151
                     59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3280151IPR003657WRKY domain
SuperFamilySSF1182906.93E-2885151IPR003657WRKY domain
PROSITE profilePS5081127.92188153IPR003657WRKY domain
SMARTSM007749.3E-3693152IPR003657WRKY domain
PfamPF031067.5E-2594151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
EENHQLQHPP PLLFPSLPCS DPLATSLEID WIAVLSGQEA TRDLPPTSST CESLERRRDE  60
EKSNQRKKGG RQRRKAVGRR RFEFQTRSTE DILDDGYRWR KYGQKAVKHS LHPRSYYKCT  120
YVTCNVKKQV QRLSKDRSIV VTTYEGIHNH PSHILMQTLT PLLKQIHTSF PLSKLFMNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2484150874Probable WRKY transcription factor 4
2lex_A3e-2484150874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818482e-89LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132602e-89LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134318.11e-133PREDICTED: probable WRKY transcription factor 43
SwissprotQ9FFS34e-45WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A0A0L6351e-133A0A0A0L635_CUCSA; Uncharacterized protein
STRINGVIT_15s0046g02150.t019e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.11e-45WRKY DNA-binding protein 24
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]