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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.258730.1 | ||||||||
Common Name | Csa_3G121060, LOC101209904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 180aa MW: 20932.8 Da PI: 10.1457 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.3e-31 | 93 | 151 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk s +prsYY+Ct+ +C+vkk+v+r ++d ++v++tYeg Hnh+ Cucsa.258730.1 93 LDDGYRWRKYGQKAVKHSLHPRSYYKCTYVTCNVKKQVQRLSKDRSIVVTTYEGIHNHP 151 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-32 | 80 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-28 | 85 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.921 | 88 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-36 | 93 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-25 | 94 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
EENHQLQHPP PLLFPSLPCS DPLATSLEID WIAVLSGQEA TRDLPPTSST CESLERRRDE 60 EKSNQRKKGG RQRRKAVGRR RFEFQTRSTE DILDDGYRWR KYGQKAVKHS LHPRSYYKCT 120 YVTCNVKKQV QRLSKDRSIV VTTYEGIHNH PSHILMQTLT PLLKQIHTSF PLSKLFMNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-24 | 84 | 150 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-24 | 84 | 150 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 2e-89 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 2e-89 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134318.1 | 1e-133 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q9FFS3 | 4e-45 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A0A0L635 | 1e-133 | A0A0A0L635_CUCSA; Uncharacterized protein | ||||
STRING | VIT_15s0046g02150.t01 | 9e-55 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 1e-45 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.258730.1 |
Entrez Gene | 101209904 |
Publications ? help Back to Top | |||
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